Skills tagged "single-cell RNA-seq"

scvelo - RNA Velocity Analysis with scVelo for Single-Cell RNA-seq

RNA velocity single-cell RNA-seq trajectory inference scVelo

★ 602 · Updated 2026-06-30

Estimate cell state transitions from unspliced/spliced mRNA dynamics, infer trajectory directions, compute latent time, and identify driver genes in single-cell RNA-seq data.

⚙ load spliced and unspliced RNA data ⚙ filter and normalize count matrices ⚙ estimate RNA velocity vectors

anndata - Manage AnnData Objects

single-cell RNA-seq bioinformatics genomics data processing

★ 119 · Updated 2026-06-30

Manage AnnData objects for single-cell genomics and biological datasets

⚙ create AnnData object ⚙ read h5ad file ⚙ write h5ad file

biomni - Autonomous Biomedical AI Agent Framework

genomics drug discovery molecular biology clinical analysis

★ 119 · Updated 2026-06-15

Autonomous biomedical AI agent framework for executing complex research tasks across genomics, drug discovery, and clinical analysis

⚙ Design CRISPR screens ⚙ Analyze single-cell RNA-seq ⚙ Predict ADMET properties

bio-single-cell-preprocessing - Single-Cell RNA-seq Preprocessing

single-cell RNA-seq quality control data filtering normalization

★ 229 · Updated 2026-06-15

Quality control, filtering, and normalization for single-cell RNA-seq using Seurat and Scanpy

⚙ calculate QC metrics ⚙ filter cells ⚙ filter genes