bio-metagenomics-functional-profiling - Metagenomic Functional Profiling with HUMAnN3
Profile functional potential of metagenomic samples using HUMAnN3 to get pathway and gene family abundances
Tags
Updated: 2026-03-20Capabilities
Typical Inputs
Typical Outputs
What this skill does
- analyze metagenomic samples
- calculate pathway abundances
- count gene families
- normalize abundance data
- regroup gene families
- split stratified tables
- generate quality reports
- visualize pathway data
- process multiple samples
- join sample tables
Inputs
- metagenomic fastq files
- taxonomic profiles
- ChocoPhlAn database
- UniRef database
- metadata files
Outputs
- gene family abundance tables
- pathway abundance tables
- pathway coverage tables
- normalized abundance tables
- regrouped gene tables
- quality control reports
- pathway heatmaps
- batch processing results
Requirements
- conda environment
- HUMAnN3 installed
- ChocoPhlAn database
- UniRef database