bio-metagenomics-functional-profiling - Metagenomic Functional Profiling Tool
Profile functional potential of metagenomes using HUMAnN3 to obtain pathway and gene family abundances.
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Updated: 2026-03-20What this skill does
- run HUMAnN3
- download databases
- process samples
- generate gene families
- generate pathway abundance
- normalize tables
- regroup gene families
- split stratified tables
- join tables
- create barplots
- calculate pathway coverage
Inputs
- metagenomic sequencing data
- database files
- taxonomic profiles
- metadata
Outputs
- gene family abundance tables
- pathway abundance tables
- pathway coverage tables
- merged tables
- normalized tables
- regrouped tables
- barplots
- heatmaps
Requirements
- conda or bioconda environment
- database files
- computational resources