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bio-read-qc-quality-reports - Generate and interpret FASTQ quality reports using FastQC and MultiQC

Generate quality reports for FASTQ files and aggregate multiple reports

Tags

Updated: 2026-02-11
bioinformaticsquality controlsequencingFASTQFastQCMultiQC

Capabilities

run FastQC on FASTQ filesaggregate reports with MultiQCprocess multiple samplescreate HTML reports

Typical Inputs

FASTQ filesFastQC configurationadapter sequences

Typical Outputs

HTML quality reportsZIP data filesmultiqc reports

What this skill does

  • run FastQC on FASTQ files
  • aggregate reports with MultiQC
  • process multiple samples
  • create HTML reports
  • extract QC metrics
  • batch process samples

Inputs

  • FASTQ files
  • FastQC configuration
  • adapter sequences
  • quality thresholds

Outputs

  • HTML quality reports
  • ZIP data files
  • multiqc reports
  • quality metrics tables
  • summary statistics

Requirements

  • FastQC installed
  • MultiQC installed
  • FASTQ file format
  • CLI environment

Source

  • Spec: SKILL.md

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