bio-spatial-transcriptomics-spatial-domains - Spatial Domain Detection in Spatial Transcriptomics
Identify spatial domains and tissue regions in spatial transcriptomics data by clustering spots with expression and spatial context
Tags
Updated: 2026-03-20Capabilities
Typical Inputs
Typical Outputs
What this skill does
- build spatial neighbors
- run Leiden clustering
- visualize spatial clusters
Inputs
- spatial transcriptomics data
- gene expression matrix
- spatial coordinates
Outputs
- spatial cluster assignments
- domain boundary visualizations
Requirements
- Python environment
- Squidpy library
- Scanpy library