scikit-bio - Analyze biological and microbiome data
Analyze biological sequences, alignments, phylogenetic trees, diversity, ordination, ecological statistics, and related file formats.
Tags
Updated: 2026-09-30Capabilities
Typical Inputs
Typical Outputs
What this skill does
- Manipulate biological sequences
- Align biological sequences
- Construct phylogenetic trees
- Analyze diversity metrics
- Perform ordination analysis
- Run ecological statistical tests
- Read biological file formats
- Write biological file formats
- Convert biological formats
- Analyze distance matrices
Inputs
- Biological sequences
- Alignment files
- Phylogenetic trees
- Count matrices
- Distance matrices
- Environmental variables
- Sample groupings
- Biological metadata
- Biological data files
Outputs
- Analyzed sequence data
- Sequence alignments
- Phylogenetic trees
- Diversity metrics
- Ordination results
- Statistical test results
- Distance matrices
- Converted biological files
- Analysis messages
Requirements
- Python environment
- scikit-bio library