scanpy - Analyze single-cell RNA-seq data with Scanpy
single-cell RNA-seq bioinformatics Scanpy AnnData
★ 2 · Updated 2026-09-29
Runs standard single-cell RNA-seq workflows including QC, normalization, dimensionality reduction, clustering, differential expression, visualization, and R-to-h5ad conversion.
⚙ Perform quality control ⚙ Normalize expression data ⚙ Compute PCA embeddings