Skills tagged "pseudotime"

scvelo - RNA Velocity Analysis with scVelo for Single-Cell RNA-seq

RNA velocity single-cell RNA-seq trajectory inference scVelo

★ 602 · Updated 2026-06-30

Estimate cell state transitions from unspliced/spliced mRNA dynamics, infer trajectory directions, compute latent time, and identify driver genes in single-cell RNA-seq data.

⚙ load spliced and unspliced RNA data ⚙ filter and normalize count matrices ⚙ estimate RNA velocity vectors

scvelo - RNA Velocity Analysis for Single-Cell Data

single-cell RNA-seq trajectory inference bioinformatics

★ 4 · Updated 2026-06-30

Estimate cell state transitions from unspliced/spliced mRNA dynamics in single-cell RNA-seq data

⚙ load data ⚙ filter and normalize ⚙ compute moments

dynamo-pseudotime-velocity - RNA Velocity from Pseudotime

RNA velocity pseudotime vector field fate prediction

★ 502 · Updated 2026-06-15

Convert pseudotime to reusable RNA velocity outputs with vector field reconstruction

⚙ preprocess data ⚙ reduce dimension ⚙ compute neighbors