Skills tagged "trajectory inference"

scanpy - Analyze single-cell RNA-seq data with Scanpy

single-cell RNA-seq bioinformatics Scanpy AnnData

★ 2 · Updated 2026-09-29

Runs standard single-cell RNA-seq workflows including QC, normalization, dimensionality reduction, clustering, differential expression, visualization, and R-to-h5ad conversion.

⚙ Perform quality control ⚙ Normalize expression data ⚙ Compute PCA embeddings

scvelo - RNA Velocity Analysis with scVelo for Single-Cell RNA-seq

RNA velocity single-cell RNA-seq trajectory inference scVelo

★ 650 · Updated 2026-06-30

Estimate cell state transitions from unspliced/spliced mRNA dynamics, infer trajectory directions, compute latent time, and identify driver genes in single-cell RNA-seq data.

⚙ load spliced and unspliced RNA data ⚙ filter and normalize count matrices ⚙ estimate RNA velocity vectors

scvelo - RNA Velocity Analysis for Single-Cell Data

single-cell RNA-seq trajectory inference bioinformatics

★ 5 · Updated 2026-06-30

Estimate cell state transitions from unspliced/spliced mRNA dynamics in single-cell RNA-seq data

⚙ load data ⚙ filter and normalize ⚙ compute moments