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Skills tagged: taxonomy

Browse skills that share this tag.

  • knowledge-taxonomy - Categorize information into knowledge base subdirectories.
    knowledge-basetaxonomycategorizationdocumentation

    ★ 18 · Updated 2026-09-16

    Categorizes extracted information into subdirectories including tasks, definitions, wiki, project-status, people, and jira-drafts based on taxonomy rules.

    ⚙ Categorize extractions using classification rules⚙ Route items to knowledge subdirectories⚙ Update existing knowledge base files
  • bio-microbiome-taxonomy-assignment - Taxonomic Classification of Amplicon ASVs
    microbiometaxonomydada2qiime2

    ★ 602 · Updated 2026-09-14

    Taxonomically classify amplicon ASVs using naive Bayes classifiers or exact matching against reference databases like SILVA, GTDB, or UNITE.

    ⚙ Assign taxonomy using DADA2⚙ Classify ASVs using QIIME2⚙ Perform exact matching using VSEARCH
  • literature-review - Systematic Literature Review for ML Research
    literature reviewML researchcitation graphtaxonomy

    ★ 18 · Updated 2026-06-30

    Systematic search methodology, taxonomy construction, citation graph exploration, and related work synthesis for ML research.

    ⚙ Search papers on Semantic Scholar⚙ Search papers on arxiv⚙ Search papers on Google Scholar
  • bio-ecological-genomics-edna-metabarcoding - eDNA Metabarcoding Analysis
    environmental DNAmetabarcodingbiodiversity monitoringamplicon sequencing

    ★ 178 · Updated 2026-06-30

    Process environmental DNA amplicon reads into species occurrence tables using OBITools3 and DADA2 with taxonomy assignment and contamination filtering.

    ⚙ trim primers⚙ align paired-end reads⚙ filter sequences
  • claw-metagenomics - Shotgun Metagenomics Profiler
    metagenomicsantimicrobial-resistancetaxonomyfunctional-profiling

    ★ 482 · Updated 2026-06-15

    Performs taxonomic classification, antimicrobial resistance detection, and functional pathway profiling on shotgun metagenomics data.

    ⚙ read FASTQ files⚙ run Kraken2 classification⚙ run Bracken abundance refinement
  • taxonomy - Extract taxonomy tags for graph traversal and memory storage
    taxonomytaggingclassificationgraph-traversal

    ★ 602 · Updated 2026-02-12

    Extract taxonomy tags for graph traversal

    ⚙ extract taxonomy tags from text⚙ validate tags against vocabulary⚙ return bridge tags